TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Infestans
         (633 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...   152   e-113

>gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.5, whole
              genome shotgun sequence
          Length = 1129684

 Score =  152 bits (385), Expect(6) = e-113
 Identities = 89/178 (50%), Positives = 114/178 (64%)
 Frame = +1

Query: 43     RSAVSGACFSRVDPTPIASPELVVTSPNSLLLVGIELNESDSKSQDEGVNGEGDDLQPIE 102
              R+ V GA F++   TP+  P+LV  +P++L L+      + +K  D+  +          
Sbjct: 297745 RAKVLGASFTKAICTPLPQPKLVCIAPSALQLLQPATAPAIAKLSDDETS---------- 297894

Query: 103    TLVPILAGNTLLPGAETAAQCYCGHQFGFFSGQLGDGAALYLGEVVAVDERWELQLKGSG 162
              + + ++AG   L G    A CY GHQFG FSGQLGDGAA+ LG V      +E QLKG+G
Sbjct: 297895 SWLHLIAGTGPLEGL---AHCYAGHQFGHFSGQLGDGAAILLGGVPG----YEAQLKGAG 298053

Query: 163    LTPYSRTADGRKVLRSTLREFLCSENMHALGVPTTRAGSVVTSKETQVLRDIFYNGDA 220
              LT +SRTADGRKVLRSTLREFL SE+MHALG+PTTRAG V  S    VLRD FY+G+A
Sbjct: 298054 LTNFSRTADGRKVLRSTLREFLASEHMHALGIPTTRAGGVAVSTTETVLRDRFYDGNA 298227



 Score =  115 bits (289), Expect(6) = e-113
 Identities = 48/58 (82%), Positives = 53/58 (91%)
 Frame = +3

Query: 305    KWQSIGFCHGVLNTDNMSIVGDTLDYGPFGFMEHFDPKHICNTSDDRGRYRYEAQPEV 362
              +WQ++GFCHGVLNTDNMSIVGDTLDYGP+GFMEHFDP+HICNTSD  GRY Y  QPEV
Sbjct: 298644 RWQAVGFCHGVLNTDNMSIVGDTLDYGPYGFMEHFDPQHICNTSDSSGRYAYAEQPEV 298817



 Score = 88.6 bits (218), Expect(6) = e-113
 Identities = 50/108 (46%), Positives = 60/108 (55%)
 Frame = +1

Query: 526    TDEERMDSIRTVWVDWIDVYISRVKEQGDAASDADRRRRMLDVNPLFVLRNHVAQKAIDF 585
              TD    D+    W  W+D Y + +  Q DAASD DR   M  VNP F LRNHVAQ AI+ 
Sbjct: 299392 TDASFRDAQAAKWRAWVDAYAALLVRQ-DAASDEDRHEAMNAVNPKFTLRNHVAQAAIEA 299568

Query: 586    AHEGDYDAVQHIFELVTNPFDEPTDDRDLEYARPQDSSTAPLCVSXSS 633
              A  GD  +VQHI  L+ +PF++        YA P D S  PL VS SS
Sbjct: 299569 AERGDDASVQHILHLLLHPFEDGLSCDSALYATPLDPSAPPLMVSCSS 299712



 Score = 75.5 bits (184), Expect(6) = e-113
 Identities = 56/147 (38%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
 Frame = +2

Query: 362    VCKWNCGVLADQLGLVTERA---GLEPILES-FDAVYEAEYMRLMREKLGLSDEEKEDKM 417
              +CKWN   L  QL  +        L  ++ES FD VY AE+  L+  KLGL  ++  + +
Sbjct: 298856 ICKWNVHNLVSQLTPLLPPPMLDALHALVESTFDEVYAAEFSALVHAKLGLVADDMSNDV 299035

Query: 418    LVDTLFDVLAFTGADFTCTFRYLSELDVFETGDCREQVLNKLVAVSETLAQQKRKLELDS 477
              L    +  L  T ADFTC FR LS+L   +     + V+  L +VS TLAQ K      +
Sbjct: 299036 LA-AWWSTLTETRADFTCAFRALSQLRTSDAA-TSDDVVEALASVSHTLAQTK---AARA 299200

Query: 478    GGVSDAQFDMVVMLLQENPVRARQYGI 504
                VS AQ   +  LL+++P RA QYGI
Sbjct: 299201 PSVSPAQLVHLRDLLEKSPARAAQYGI 299281



 Score = 52.0 bits (123), Expect(6) = e-113
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +3

Query: 222    MEPTAVVTRIAKSFLRFGSFEIFKDEDKLTGLAGPSAHL 260
              +EP A V RIA++F+RFGSFE+FK  D  TG +GPSA L
Sbjct: 298278 IEPVATVLRIAETFIRFGSFELFKPVDATTGRSGPSADL 298394



 Score = 30.0 bits (66), Expect(6) = e-113
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 263    KEEMMREMLDFTIRQYYS---EISGARKYEKFFQEVVRRTAMLVAKW 306
              KE  +R M+ F    YY    ++    K + F Q +  RTA LVAK+
Sbjct: 298457 KEATLRAMVSFVAETYYKLPRDMPFEDKTQAFLQALCERTARLVAKY 298597


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,536,286
Number of Sequences: 1445
Number of extensions: 576981
Number of successful extensions: 3327
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2538
Number of HSP's gapped (non-prelim): 1611
length of query: 633
length of database: 17,710,878
effective HSP length: 110
effective length of query: 523
effective length of database: 17,551,928
effective search space: 9179658344
effective search space used: 9179658344
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)